Computational Science Research Center

Computational Science Research Center

Publications

“MOLE User Manual”, Valeria Barra, Angel Boada, Jared Brzenski, Jose Castillo, Prit Chakalasiya, Surinder Chhabra Singh, Johnny Delgado Corbino, Tony Drummond, Miguel Dumett, Joe Hellmers, Arshia Ilaty, Katayoon Kaviani, Oluchi Nzerem, Giulia Pagallo, Christopher Paolini, Valentina Rosano, Aneesh Murthy Srinivas, Janani Priyadharshini Srinivasan, Manuel Valera


H. Maddah, V. Berry, and S. K. Behura, “Optimal Design of Spin-Coated Layers of TiO2 for Maximum Open-Circuit Voltage in Anthocyanin-Based Dye-Sensitized Solar Cells,” Energy Conversion and Management, Vol. 346, p. 120478 (2025).


A. Cobarrubia, S. Tauro, J. R. Hendrickson, and S. K. Behura*, “Characterization of Hexagonal Boron Nitride Quantum Emitter as an SLH Tensor Network,” The Journal of Physical Chemistry C, Vol. 129, p. 14430-14439 (2025).


N. Schottle, N. Kapchinske, C. A. Bhuyan, R. Palmares, E. Janzen, C. M. Torres, J. H. Edgar, and S. K. Behura*, “Photophysics of Direct and Indirect Interlayer Excitons in MoS2/WS2 Moiré Superlattices,” ACS Photonics, Vol. 12, p. 4670-4677 (2025).


K. Sharma, S. Che, S. K. Behura, N. Dandu, A. Shinde, A. Ngo, and V. Berry, “η6 Organometallic Functionalization of Hexagonal Boron Nitride: Implications for Multifunctional Molecular and Nanoscale Interface for Electronic Devices,” ACS Applied Nano Materials, Vol. 8, p. 233-243 (2025).


Stability and dynamics of massive vortices in two-component Bose-Einstein condensates. J. D’Ambroise, Wenlong Wang, C. Ticknor, R. Carretero-González, and P.G. Kevrekidis. Phys. Rev. E111 (2025) 034216. 


The continuous spectrum of bound states in expulsive potentials. H. Sakaguchi, B.A. Malomed, A.C. Aristotelous, and E.G. Charalampidis. (submitted, https://arxiv.org/abs/2602.07281)


Stability and mixed phases of three-component droplets in one dimension. I.A. Englezos, E.G. Charalampidis, P. Schmelcher, S.I. Mistakidis (submitted, https://arxiv.org/abs/2601.04950)


Multi-hump Collapsing Solutions in the Nonlinear Schrödinger Problem: Existence, Stability and Dynamics. S. Jon Chapman, M. Kavousanakis, E.G. Charalampidis, I.G. Kevrekidis and P.G. Kevrekidis (to appear, https://arxiv.org/abs/2504.09746)


On the proximity of Ablowitz-Ladik and discrete Nonlinear Schrödinger models: A theoretical and numerical study of Kuznetsov-Ma solutions. M.L. Lytle, E.G. Charalampidis, D. Mantzavinos, J. Cuevas-Maraver, P.G. Kevrekidis and N. Karachalios. Wave Motion, 137, 103547 (2025) article


On the discrete Kuznetsov–Ma solutions for the defocusing Ablowitz-Ladik equation with large background amplitude. E.C. Boadi, E.G. Charalampidis, P.G. Kevrekidis, N.J. Ossi and B. Prinari. Wave Motion, 134, 103496 (2025)


Two-component droplet phases and their spectral stability in one dimension. E.G. Charalampidis and S.I. Mistakidis. Phys. Rev. A, 111, 013318 (2025) 


CombOpNet: A Neural-Network Accelerator for SINDy. S. Xing, Q. Han, and E.G. Charalampidis. J. Vib. Tes. and Sys. Dyn., 9(1) (2025) 


Parallel finite-element codes for the Bogoliubov-de Gennes stability analysis of Bose-Einstein condensates. G. Sadaka, P. Jolivet, E.G. Charalampidis and I. Danaila. Comput. Phys. Commun., 306, 109378 (2025) 


Alles Rebel, Nikil Dutt, and Bryan Donyanavard. 2025. OASIS: Optimized Adaptive System for Intelligent SLAM. ACM Trans. Embed. Comput. Syst. 24, 5s, Article 123 (September 2025), 22 pages. https://doi.org/10.1145/3761808


Vagus S, Casey TM, George UZ. Persistent entropy links irregularities in daily and weekly rest and activity cycles during gestation week 22 and 32 to maternal and neonate health outcomes: A prospective cohort study. PLoS One. 2026 Mar 16;21(3):e0342509. doi: 10.1371/journal.pone.0342509. PMID: 41838777; PMCID: PMC12991255.


Woods M, Bogdan P, George UZ. (2025) Polar partitioning method for the multifractal characterization of complex heterogeneous structures. (Accepted, Chaos, Solitons & Fractals)


Schwartz AV, Sant KE and George UZ. (2025) Integrating Network Analysis and Machine Learning to Elucidate Chemical-Induced Pancreatic Toxicity in Zebrafish Embryos. Toxicological Sciences, p.kfaf069.


Schwartz AV, Chao G, Robinson M, Conley, BM, Adam MAA, Wells G, Hoang A, Albekioni E, Gallo C, Weeks J, Yunker K, Quichocho G, George UZ, Niesman I, House CD, Turcan Ş, Sohl CD (2025). Catalytically distinct metabolic enzyme isocitrate dehydrogenase 1 mutants tune phenotype severity in tumor models. Journal of Biological Chemistry, 301(5), 108477


C-G.Lucas, J.Gilles. “Multidimensional empirical wavelet transform”, SIAM Journal on Imaging Sciences, Vol.18, No.2, 906–935, April 2025.


J.Gilles, R.Castro. “Empirical wavelet frames”, Advances in Data Science and Adaptive Analysis, Vol.17, No.01n02, 2550001, 2025.


Hasenstab KA, Lu J, Leong LT, Bossard E, Pylarinou-Sinclair E, Devi K, Cunha GM. Relationship between spleen volume and diameter for assessment of response to treatment on CT in patients with hematologic malignancies enrolled in clinical trials. Abdom Radiol. 2025. doi: 10.1007/s00261-025-05030-7. Link.


Sankaran R, Cypro A, Hasenstab K, Steward AM, Afshar K, Golts E, Chung J, Hsiao A. Clinical Implementation of Inspiratory-Expiratory Chest CT: Defining Quality Criteria for Diagnostic Quality and Detection of Concurrent FEV1 Decline following Lung Transplantation. Radiology: Cardiothoracic Imaging. 2025 Sep 11;7(5):e240468. Link.


Nasir M, Xu Y, Hasenstab K, Yechoor A, Dodhia R, Weeks WB, Lavista Ferres J, Moura Cunha G. Liver MRI proton density fat fraction inference from contrast enhanced CT images using deep learning: A proof-of-concept study. PLoS One. 2025 Aug 8;20(8):e0328867. Link.


S. Chatterjee, Y. Gupta, S. K. Sharma and S. Bhattacharyya, “Design of a Wideband Low-Profile Transmitarray Antenna with Subwavelength Metasurfaces”, IEEE Open Journal of Antennas and Propagation Volume: 6, Issue: 6, December 2025, Page(s): 1728 – 1740.


Parveez Shariff B. G., Tanweer Ali, Satish Kumar Sharma, Qammer H. Abbsi, Massor Ur Rehman, Yahia M. M. Antar, Pradeep Kumar, Pallavi R. Mane, Sameena Pathan “Dual-Band Narrow Beam MIMO Array Antenna with High Isolation for Cellular 5G Millimeter Wave Applications”, IEEE ACCESS, Volume: 13, Page(s): 103761 – 103785, 12 June 2025.


Parveez Shariff B. G., Tanweer Ali, Pallvi R. Mane, Sameena Pathan, Qammer H. Abbasi, Masood Ur Rehman, Yahia M. M. Antar, Satish Kumar Sharma, Ahmed A. Kishk, “Wideband Narrow-Beam 16-Element Two-Port MIMO Array Antenna with High Isolation for Automotive Radar and 5G Millimeter Wave Applications”, IEEE Open Journal of Antennas and Propagation, Volume: 6, Issue: 5, October 2025, Page(s): 1502 – 1523.


S. K. Sharma, “Beam Steering Antennas using Risley Prisms at San Diego State University: An Overview”, 9th IEEE RADIO International Conference, Wolmar, Mauritius, Oct 27, 2025.


P. Shariff, T. Ali, S. K. Sharma, and D. M. John, “A Compact Wideband MIMO Antenna Operating at 122 GHz for Radar and 6G Applications”, 2025 IEEE Microwaves, Antennas, and Propagation Conference (MAPCON), Kochi, India, Dec 14-18, 2025


Seth Waldstein, James Downey, Bryan Schoenholz, Sarah Dever, Mick Koch, Taylor Pember, Lauryn Leslie, Casey Baron, James Nessel, S. K. Sharma and S. Das, “FIGARO (5G Phased Array Antenna for Lunar Relay Operations) High-Altitude Balloon Flight Test, 39th Annual Small Satellite Conference, Salt Lake City, Utah, Aug 10-13, 2025 (Accepted for presentation)


Sonika Biswal, and S. K. Sharma, “Circularly Polarized Hemispherical Reflective Metasurface-Backed Phased Array for 6G HAP-Based NTN Communications”, 2025 IEEE Microwaves, Antennas, and Propagation Conference (MAPCON), Kochi, India, Dec 14-18, 2025


A. Gratas, N. Truong, S. Das and S. K. Sharma, “Co-located Individually Excited Dual-band Miniaturized Loop Antennas Utilizing Inherent Impedance Matching for Wearable RF Applications”, 2025 IEEE Microwaves, Antennas, and Propagation Conference (MAPCON), Kochi, India, Dec 14-18, 2025


A. Sharma, K. R. Jha, and S. K. Sharma, “Tri-Band Electrically Small Planar Antenna for IoT and Sub-6 GHz Applications”, IEEE MAPCON 2025, Kochi, India (Submitted).


Z. A. P. Jibran, K. R. Jha, and S. K. Sharma, “Highly Directive V-Band Fabry-Perot Cavity Antenna for Train-to-Train Communication”, IEEE MAPCON 2025, Kochi, India (Submitted).


S. Das, A. Murray, S. K. Sharma, A. Iyer, “Design of an Electrically Small, Inherently Matched Hemispherical Monopole Antenna and Evaluation of Its Quality Factor’”, IEEE AP-S/URSI 2025, Ottawa, Canada, July 13-18, 2025.


P. Mahajan, B. Shanmugam, S. Das, S. K. Sharma, N. Xu, and K. P. Rao, “’Miniaturized, Tri-Band (2.4 GHz, 5.2 GHz and 5.8 GHz), and Self-Matched Antenna Design for Body Wearable Applications’, IEEE AP-S/URSI 2025, Ottawa, Canada, July 13-18, 2025.


S. K. Sharma, “’Learning Phased Array Antennas with Professor Shafai: Leading to the Innovative Flat Panel Phased Array Antenna Research”, IEEE AP-S/URSI 2025, Ottawa, Canada, July 13-18, 2025. (Abstract).


S. Biswal, and S. K. Sharma, “Advanced Phased Array Antenna Systems for 6G Non-Terrestrial Networks: Enabling Next-Generation Global Connectivity’, IEEE AP-S/URSI 2025 (Abstract).


P. Shariff, T. Ali, S. K. Sharma, P. Mane, S. Baig, “A Millimeter Wave Metamaterial Based Array Antenna Structure with Dual-Band Resonance”, WAMS 2025, Chennai, India.


S. K. Sharma, S. Das, Jia-Chi Chieh, “An Overview of Recent Flat-Panel Active Electronically Scanned Phased Array Research at the San Diego State University”, GOMACTech (Government Microcircuit Applications & Critical Technology Conference) 2025, March 17-20, 2025, Pasadena, CA, USA


S. K. Sharma, and S. Das, “Design and Development of K/Ka-Band Flat Panel Phased Array Antennas and Data Throughput Testing”, 2025 IEEE International Workshop on Antenna Technology (iWAT), Cocoa Beach, Florida, USA, Feb 18-21, 2025 (Accepted, Invited talk)


S. K. Sharma, “Efficient Use of the Frequency Spectrum and Secure Communications in Consideration to Antenna Design”, NRSM 2025, Boulder, CO, Jan 7-10, 2025. (Abstract) (Presented, Invited talk)


Benjamin Bradshaw, Miguel Saavedra-Melo, Satish Sharma, and Filippo Capolino, “On RIS Bandwidth: Bandwidth Discussion and Trade-offs for a Dual Resonant, Dual Linearly Polarized Element”, NRSM 2025, Boulder, CO, Jan 7-10, 2025. (Presented)


Nhat Truong, S. Das, S. K. Sharma, J.C. Chiieh, R. Farkouh and G. Rebeiz, “Wideband Dual-Circularly Polarized Phased Array Antenna using a Novel Radiating Element for Ku-band SATCOM Applications”, NRSM 2025, Boulder, CO, Jan 7-10, 2025. (Presented)


Pranav Yogesh Mahajan, Balamurugan Shanmugam, Sanghamitro Das and Satish K Sharma, “Miniaturized, Tri-Band (2.4 GHz, 5.2 GHz, and 5.8 GHz), and Self-Matched Antenna Design for Future Earbud Applications”, NRSM 2025, Boulder, CO, Jan 7-10, 2025. (Abstract)

A. Cobarrubia, N. Schottle, D. Suliman, S. Gomez, C. Patino, B. Keifer, and S. K. Behura*, “Hexagonal Boron Nitride Quantum Simulator: Prelude to Spin and Photonic Qubits,” ACS Nano, Vol. 18, p. 22609-22619 (2024).


L. Lipsa, S. Parida, S. K. Behura, A. Choudhury, and A. Roy, “Scalable Piezoelectric Energy Harvesting from PVDF-HFP/BZT-BCT/GO Hybrid Composite Film,” Applied Physics Letters, Vol. 125, p. 043902 (2024).


R. Rajan, K. Appavoo, C. Lungu, S. K. Behura, V. Thomas, “Plasma-Corona Processed Nanostructured Coating for Thermo-regulative Textiles,” ACS Applied Polymer Materials, Vol. 6, p. 14047-14056 (2024).


K. Chowdhury, S. K. Behura, M. Rahimi, and M. Heydari Gharahcheshmeh, “oCVD PEDOT-Cl Thin Film Fabricated by SbCl5 Oxidant as the Hole Transport Layer to Enhance the Perovskite Solar Cell Device Stability,” ACS Applied Energy Materials, Vol. 7, p. 1068-1079 (2024).


On the temporal tweezing of cavity solitons. J. Rossi, Sathyanarayanan Chandramouli, R. Carretero- González, and P.G. Kevrekidis. J. Nonlinear Math. Phys. 31 (2024) 43. 


Skin modes in a nonlinear Hatano-Nelson model. Bertin Many Manda, R. Carretero-González, P.G. Kevrekidis, and Vassos Achilleos. Phys. Rev. B 109 (2024) 094308. 


Nonlinear Waves & Hamiltonian Systems: From One To Many Degrees of Freedom, From Discrete To Continuum. R. Carretero-González, D.J. Frantzeskakis, and P.G. Kevrekidis. Oxford University Press, 2024. ISBN: 978-0-19-284324-1.


Learning Traveling Solitary Waves Using Separable Gaussian Neural Networks. S. Xing and E.G. Charalampidis. Entropy, 26(5), 396 (2024) 


Self-similar blowup solutions in the generalized Korteweg-de Vries equation: Spectral analysis, normal form and asymptotics. S. Jon Chapman, M. Kavousanakis, E.G. Charalampidis, I.G. Kevrekidis and P.G. Kevrekidis. Nonlinearity, 37, 095034 (2024) 


A. Azizi, G. Arutchelvan, N. Safron, C.-P. Chuu, Y. Lee, M. Dogan, D. M. Sathaiya, H.-S. P. Wong, M. L. Cohen, A. Zettl, I. Radu, “Bilayer Alloy Contacts for High-Performance p-Type 2D Semiconductor Transistors”, conference paper in 70th International Electron Devices Meeting (2024).


M. Dogan, J. R. Chelikowsky, M. L. Cohen, “Anisotropy and Isotope Effect in Superconducting Solid Hydrogen”, J. Phys.: Condens. Matter 36, 01LT01 (2024).


Ulloa D, Temple K, Park E, Casey, TM, George UZ. (2024) Uniaxial force modifies the length of the mammary ductal network and the orientation of ducts during pubertal development: Findings from computational modeling and laboratory experiments. bioRxiv [Preprint]. 2024.10.15.618498; doi: https://doi.org/10.1101/2024.10.15.618498


Schwartz AV, Sant KE, George UZ. (2024) danRerLib: a Python package for zebrafish transcriptomics. Bioinformatics Advances. Jan 1;4(1):vbae065.


C-G.Lucas, J.Gilles. “Demons registration for 2D empirical wavelet transforms”, Foundations, Vol.4, No.4, 690-703, December 2024.


S.Young, J.Gilles. “Use of 3D chaos game representation to quantify DNA sequence similarity with applications for hierarchical clustering”, Journal of Theoretical Biology, Vol.596, 111972, January 2025.


Hasenstab K, Hahn L, Chao N, Hsiao A. Simulating clinical features on chest radiographs for medical image exploration and CNN explainability using a style-based generative adversarial autoencoder. Scientific Reports. 2024; 14:24427. doi: 10.1038/s41598-024-75886-0. Link


O’sullivan M, Hasenstab K. ALEKS Placement, Preparation and Learning Scores as a Predictor of Success in Calculus. Primus. 2024; 34(10):1025-1049. doi: 10.1080/10511970.2024.2411054. Link.


Lee A, Hsiao A, Hasenstab K. Evaluating the Cumulative Benefit of Inspiratory CT, Expiratory CT, and Clinical Data for COPD Diagnosis and Staging through Deep Learning. Radiology: Cardiothoracic Imaging. 2024; 6(6):e240005. doi: 10.1148/ryct.240005. Link.


Kaestner E, Hassanzadeh R, Gleichgerrcht E, Hasenstab K, Roth RW, Chang A, Rüber T, Davis KA, Dugan P, Kuzniecky R, Fridriksson J, Parashos A, Bagić AI, Drane DL, Keller SS, Calhoun VD, Abrol A, Bonilha L, McDonald C. Adding the Third Dimension: 3D Convolutional Neural Network Diagnosis of Temporal Lobe Epilepsy. Brain Communications. 2024 Oct 10;6(5):fcae346. doi: 10.1093/braincomms/fcae346. Link.


Zecevic M, Hasenstab K, Wang K, Dhyani M, Cunha GM. Signal Intensity Trajectories Clustering for Liver Vasculature Segmentation and Labeling (LiVaS) on Contrast-Enhanced MR Images: A Feasibility Pilot Study. Journal of Imaging Informatics in Medicine. 2024. 37:873–883. doi: 10.1007/s10278-024-00970-w. Link.


Z. A. P. Jibran, K. Jha, S. K. Sharma and A. Shukla, “An Ultra-thin Switched State Active Frequency Selective Surface Absorber with Wide Bandwidth using Semi-Analytical Method”, IET Microwave, Antennas and Propagation (MAP), Volume 18, Issue 12, December 2024, Pages 944-956.


N. Truong, S. Das and S. K. Sharma, “Design of a Highly Miniaturized and Inherently Matched Printed Square Loop Antenna”, IET Microwave, Antennas and Propagation (MAP) Volume18, Issue10, October 2024, Pages 723-730.


Sanghamitro Das, Helena Clavin, Kaushik Debbarma, Satish K. Sharma, Philip M. Lambert and Colby O. Hobart, “Design and Development of a High-Gain Broadband Balanced Antipodal Vivaldi Antenna using a 3D-Printed Shaped Dielectric Lens”, IEEE ACCESS, 2024, Volume: 12, Page(s): 56836-56846, Digital Object Identifier: 10.1109/ACCESS.2024.3390685


K. Debbarma, S. K. Sharma, Jia-Chi Chieh, “V-band Compact Risley Prism Integrated with Phase Correcting Surface Providing High Gain 2D Beam Steering Performance”, IEEE Trans Antennas and Propagation, MARCH 2024, Volume: 72, Issue: 3, On Page(s): 2873-2878


K. Debbarma, S. K. Sharma, Jia-Chi Chieh, and N. Truong, “Beam Steering Performance of an X-band Offset Parabolic Cylindrical Reflector Fed by Triple-mode Horn Integrated with Risley Prism and Phase Correcting Dielectric Lens”, IEEE Open Journal of Antennas and Propagation, 2024, VOL. 5, NO. 2, APRIL 2024, pp. 446-459.


Zahoor A. Pandit Jibran, Kumud Ranjan Jha, Satish K. Sharma, and Ashish Suri, “An Ultrawide Band 5G Millimeter Wave Antenna Using Square Loop Ring Resonators”, 2024 IEEE Microwaves, Antennas, and Propagation Conference (MAPCON), Hyderabad, India, Dec 9-13, 2024.


Ajay Kochar, Kumud Ranjan Jha, Satish K. Sharma, Zahoor A. Pandit Jibran, “Miniaturized Tunable Bandpass Filter for Sub-1 GHz Band Applications”, 2024 IEEE Microwaves, Antennas, and Propagation Conference (MAPCON), Hyderabad, India, Dec 9-13, 2024.


D. Tandel and S. K. Sharma, “Gain Enhancement of Wideband Miniaturized Monocone Antenna by Employing Cavity and Dielectric Lens”, 2024 IEEE Conference on Antenna Measurements and Applications (CAMA), Da Ning, Vietnam, Oct 9-11, 2024.


S. Das, N. Truong, S. K. Sharma, Jia-Chi Chieh, and R. Farkouh, “A Novel Wideband, Wide-Angle Scanning, Polarization-Reconfigurable Phased Array Antenna for Ku-Band SATCOM Applications”, 2024 IEEE International Symposium on Phased Array Systems and Technology, Boston, MA, Oct. 15-18, 2024.


K. Jha, and S. K. Sharma, “Conformal Four-Port MIMO Antenna for BAN”, 2024 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 13-18 July 2024 in Florence, Italy.


Nhat Troung, Sanghamitro Das, Satish Sharma, Jia-Chi Chieh, Raif Farkouh, “Wideband Dual-Circularly Polarized Phased Array Antenna using a Novel Radiating Element for Ku-band SATCOM Application”, 2024 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 13-18 July 2024 in Florence, Italy. (Abstract)


Sanghamitro Das, Satish Sharma, Nhat Troung, Jia-Chi Chieh, Raif Farkouh, “A Single-Layer Dual-Circularly Polarized Microstrip Patch Antenna for Flat-Panel Wideband Active Electronically-Scanned Phased Array Applications”, 2024 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 13-18 July 2024 in Florence, Italy. (Abstract)


Kaushik Debbarma, Kevin Tao, Satish Sharma, Sanghamitro Das, “Beam Steering Performance of a 3-D Printed LP to CP Polarizer Integrated with Risley Prism”, 2024 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 13-18 July 2024 in Florence, Italy. (Abstract)


K. Jha and S. K. Sharma, “Simplified Biasing AFSS Microwave Absorber”, WAMS 2024, India, Feb 2024.


D. Tandel, and S. K. Sharma, “An Extremely Wideband 3-D Printed Compact Antenna for MIMO Applications”, NRSM 2024, Boulder, CO, Jan 9-12, 2024. (Abstract)


S. Das, and S. K. Sharma, “Wideband, Polarization-Agile Reconfigurable Intelligent Surfaces”, NRSM 2024, Boulder, CO, Jan 9-12, 2024. (Abstract)


Sukumaran, J., & Meila, M. (2024). Piikun: An information theoretic toolkit for analysis and visualization of species delimitation metric space. BMC Bioinformatics, 25(1), 385.


Moreno, M. A., Holder, M. T., & Sukumaran, J. (2024). DendroPy 5: A mature Python library for phylogenetic computing. Journal of Open Source Software, 9(101), 6943. https://doi.org/10.21105/joss.06943


Hill, J. L., Grisnik, M., Hanscom, R. J., Sukumaran, J., Higham, T. E., & Clark, R. W. (2024). The past, present, and future of predator-prey interactions in a warming world: Using species distribution modeling to forecast ectotherm-endotherm niche overlap. Ecology and Evolution, 14(3), e11067.


Ortiz-Velez, A., Sukumaran, J., Rouzbehani, R., & Kelley, S. T. (2024). AutoPhy: Automated phylogenetic identification of novel protein subfamilies. PLOS ONE, 19(1), e0291801.

C. Okeke, I. Juma, A. Cobarrubia, N. Schottle, H. Maddah, M. Mortazavi, and S. K. Behura*, “Probing Anharmonic Phonons in WS2 van der Waals Crystal by Raman Spectroscopy and Machine Learning,” iScience, Vol. 26, p. 107174 (2023).


Solitary waves in a quantum droplet-bearing system.
G.C. Katsimiga, S.I. Mistakidis, G.N. Koutsokostas, D.J. Frantzeskakis, R. Carretero-González, and P.G. Kevrekidis. Phys. Rev. A 107 (2023) 063308. 


Interactions and dynamics of one-dimensional droplets, bubbles and kinks. G.C. Katsimiga, S.I. Mistakidis, B.A. Malomed, D.J. Frantzeskakis, R. Carretero-González, and P.G. Kevrekidis. Condens. Matter 8(3) (2023) 67. 


Dragging a defect in a droplet Bose-Einstein condensate. S. Saqlain, Thudiyangal Mithun, R. Carretero-González, and P.G. Kevrekidis. Phys. Rev. A 107 (2023) 033310. 


M. Dogan, K.-H. Liou, J. R. Chelikowsky, “Real-space solution to the electronic structure problem for nearly a million electrons”, J. Chem. Phys. 158, 244114 (2023).


M. Dogan, K.-H. Liou, J. R. Chelikowsky, “Solving the electronic structure problem for over 100 000 atoms in real-space”, Phys. Rev. Materials 7, L063001 (2023).


D. C. Popple, M. Dogan, T. V. Hoang, S. Stonemeyer, P. Ercius, K. C. Bustillo, M. L. Cohen, A. Zettl, “Charge-induced phase transition in encapsulated HfTe2 nanoribbons”, Phys. Rev. Materials 7, L013001 (2023).


V. Gavini, S. Baroni, V. Blum, D. R. Bowler, A. Buccheri, J. R. Chelikowsky, S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi, M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J. M. Herbert, S. Kokott, T. D. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J. E. Pask, C. Plessl, L. E. Ratcliff, R. M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P. Suryanarayana, M. Torrent, L. Truflandier, T. L. Windus, Q. Xu, V. W.-Z. Yu, D. Perez, “Roadmap on Electronic Structure Codes in the Exascale Era”, Modelling Simul. Mater. Sci. Eng. 31 063301 (2023).


Schwartz AV, Sant KE and George UZ. (2023). Development of a Dynamic Network Model to Identify Temporal Patterns of Structural Malformations in Zebrafish Embryos Exposed to a Model Toxicant, Tris(4-chlorophenyl)methanol). Journal of Xenobiotics, 13(2): 284-297.


Montes M, Brunton M, Mann A, Teeple K, George UZ, Boerman J, Casey T. (2023) Relationship between body temperature and behavior-activities of non-pregnant early lactation dairy cows. JDS Communications, 4(4):308-312. https://doi.org/10.3168/jdsc.2022-0327


Bird E, Hasenstab K, Hahn L, Malhotra A, Kligerman S, Kim N, Madani M, Hsiao A, Contijoch F. Mapping the Spatial Extent of Hypoperfusion in Chronic Thromboembolic Pulmonary Hypertension Using Multienergy CT. Radiology: Cardiothoracic Imaging. 2023. Aug 10;5(4):e220221. doi: 10.1148/ryct.220221. Link.


Wang K, Cunha GM, Hasenstab K, Henderson WC, Middleton MS, Cole SA, Umans JG, Ali T, Hsiao A, Sirlin CB. Deep Learning for Inference of Hepatic Proton-Density Fat Fraction From T1-Weighted In-Phase and Opposed-Phase MRI: Analysis of Population-Based Trial Data. AJR American Journal of Roentgenology. 2023 Jul 19;221(5):620-631. doi: 10.2214/AJR.23.29607. Link.


Kaestner E, Rao J, Chang AJ, Wang ZI, Busch RM, Keller SS, Rüber T, Drane DL, Stoub T, Gleichgerrcht E, Bonilha L, Hasenstab K, McDonald C . Convolutional Neural Network Algorithm to Determine Lateralization of Seizure Onset in Patients With Epilepsy: A Proof-of-Principle Study. Neurology. 2023 Jul 18;101(3):e324-e335. doi: 10.1212/WNL.0000000000207411. Link.


Hasenstab K, Huyhn J, Masoudi S, Cunha GM, Hsiao A, Madani M, Hsiao A. Feature Interpretation using Generative Adversarial Networks. IEEE Access. 2023; 11:5144-5160. doi: 10.1109/ACCESS.2023.3236575. Link.


Hasenstab, K. Convolutional Neural Networks and their Applications in Medical Imaging: A Primer for Mathematicians. AMS Notices. 2023. doi: 10.1090/noti2598. Link.


Jia-Chi Samuel Chieh, Satish K. Sharma, Raif Farkouh, Sanghamitro Das, Everly Yeo, Maxwell Kerber, Randall Olsen, Emanuel Merulla, Stephen Badger, “Over-the-Air Testing of Electronically Scanned Antenna Arrays”, IEEE Microwave Magazine, Volume: 24, Issue: 10, October 2023, Page(s): 59 – 67.


K. Jha, N. Rana and S. K. Sharma, “Design of Compact Antenna Array for MIMO Implementation using Characteristic Mode Analysis for 5G NR and Wi-Fi 6 Applications”, IEEE Open Journal of Antennas and Propagation, Volume: 4, Page(s): 262 – 277, 2023.


R. Banerjee, S. K. Sharma, S. W. Waldstein, J. M. Downey, B. L. Shoenholz, S. M. Dever, J. A. Nessel, and S. Das, “A 22–28 GHz Polarization-Reconfigurable Flat-Panel 8 × 8 Tx/Rx Phased Array Antenna With Uniquely Arranged Novel Radiating Elements for CubeSat Communication”, IEEE Trans Antennas and Propagation, Volume: 71, Issue: 5, May 2023, Page(s): 4138 – 4152


S. Das, S. K. Sharma, S. W. Waldstein, J. M. Downey, B. L. Shoenholz, S. M. Dever, J. A. Nessel, and R. Banerjee’ “A Flat-Panel 8 × 8 Wideband K-/Ka-Band Dual Circularly Polarized Phased Array Antenna for CubeSat Communications”, IEEE Trans Antennas and Propagation, Volume: 71, Issue: 5, May 2023, Page(s): 4153 – 4166.


Riya, K. Jha and S. K. Sharma, “Solar Cell Integrated Optically Transparent Antenna”, IEEE MAPCON 2023, India, Dec 2023.


Kenneth Sherman, Jia-Chi S. Chieh, Satish K. Sharma, “An Electronically Steerable G-Band Leaky Wave Antenna based on the Smith-Purcell Effect”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland (Abstract).


Kaushik Debbarma, Satish K. Sharma, “Wideband 3-D Printed LP to CP Polarizer Integrated with Phase Correcting Surface for Enhanced Polarization Quality”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland (Abstract)


Kaushik Debbarma, Satish K. Sharma, Sanghamitro Das, Jim Drago, Dennis Kan, “Wideband 2-D Beam Steering With Gain Enhancement Employing Planar All Dielectric Risley Prism and Phase Correcting Structure”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland. (Abstract)


Sanghamitro Das, Satish K. Sharma, Jia-Chi S. Chieh, “Grating Lobe Cancellation by Null Steering in a Wideband Phased Array Antenna with 1λ Inter-Element Spacing”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland. (Abstract)


Nhat Truong, Sanghamitro Das, Satish K. Sharma, “Investigation of Mutual Coupling between Two Collocated Electrically Small Printed Square Loop Antennas”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland. (Abstract)


Sanghamitro Das, Satish K. Sharma, Colby O. Hobart, Philip M. Lambert, “3D Printed Dielectric Lens with Balanced Antipodal Vivaldi Antenna for Broadband High Gain 5G New Radio Applications”, 2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting on 23-28 July 2023 in Portland. (Abstract)


Kaushik Debbarma and Satish K. Sharma, “Risley Prism With Integrated Phase Correcting Structure Excited by Circularly Polarized Patch Array With Enhanced Gain and Beam Steering Performance”, EMTS 2023.


Jia-Chi Chieh and S. K. Sharma, “A 1.0 km 150 Mbps Ka-Band RF Link Based on a 64-Element Transmit and Receive Phased Array Antennas”, EMTS 2023. (Abstract)


S. Das, S. K. Sharma and A. Iyer, “Experimental Verification of a Highly Miniaturized and Inherently Matched Hemispherical Monopole Antenna”, 2023 URSI International Symposium on Electromagnetic Theory (EMTS). (Abstract)


Kaushik Debbarma, Satish K. Sharma, Jia-Chi S. Chieh, “A Dual-CP Mechanical Beam Steering Antenna Design Using Two Element and Three Element Risley Prism with Phase Correcting Surface”, NRSM 2023 (Abstract).


Rudraishwarya Banerjee, Satish K. Sharma, Seth W Waldstein, James M. Downey, Bryan L. Schoenholz, Sarah M. Dever, James A. Nessel, “A Wideband Dual Linear/Circular Polarized 64-Element Phased Array Antenna for SATCOM Applications”, NRSM 2023.


Sanghamitro Das, Satish K. Sharma, Rudraishwarya Banerjee, Seth W. Waldstein, James M. Downey, Bryan L. Schoenholz, Sarah M., “Flat-Panel Wideband Dual-Circularly Polarized 8×8 Phased Array Antenna for SATCOM Applications”, NRSM 2023.


Hanscom, R. J., Hill, J. L., Patterson, C. A., Marbach, T., Sukumaran, J., Higham, T., & Clark, R. W. (2023). Cryptic behavior and activity cycles of a small mammal keystone species revealed through accelerometry: A case study on Merriam’s kangaroo rats (Dipodomys merriami). Movement Ecology, 11(1), 20.


Hanscom, R. J., DeSantis, D. L., Hill, J. L., Marbach, T., Sukumaran, J., Tipton, A. F., Thompson, M. L., Higham, T. E., & Clark, R. W. (2023). How to study a predator that only eats a few meals a year: High-frequency accelerometry to quantify feeding behaviours of rattlesnakes (Crotalus spp.). Animal Biotelemetry, 11(1), 20.


Muñoz-Ramírez, C. P., Colin, N., Canales-Aguirre, C. B., Manosalva, A., López-Rodríguez, R., Sukumaran, J., & Górski, K. (2023). Species tree analyses and speciation-based species delimitation support new species in the relict catfish family Diplomystidae and provide insights on recent glacial history in Patagonia. Molecular Phylogenetics and Evolution, 189, 107932. https://doi.org/10.1016/j.ympev.2023.107932

H. Maddah, V. Berry, and S. K. Behura, “Simple Harmonic Oscillation Model Explaining MA Torsional Locking in Surface Passivated MAPbI3 Crystal,” Chemical Physics Letters, Vol. 806, p. 139967 (2022).


P. Muduli, S. Parida, S. K. Behura, S. Rajput, S. Rout, and S. Sareen, “Synergistic Effect of Graphene on Dielectric and Piezoelectric Characteristic of PVDF-(BZT-BCT) Composite for Energy Harvesting Applications,” Polymers for Advanced Technologies, Vol. 33, p. 3628-3642 (2022).


Existence, Stability and Dynamics of Monopole and Alice Ring Solutions in Anti-Ferromagnetic Spinor Condensates. Thudiyangal Mithun, R. Carretero-González, E.G. Charalampidis, D.S. Hall, and P.G. Kevrekidis. Phys. Rev. A 105 (2022) 053303. 


Superfluid vortex multipoles and soliton stripes on a torus. J. D’Ambroise, R. Carretero-González, P. Schmelcher, and P.G. Kevrekidis. Phys. Rev. A 105 (2022) 063325. 


Kink-antikink stripe interactions in the two-dimensional sine-Gordon equation. R. Carretero-González, L.A. Cisneros-Ake, R. Decker, G.N. Koutsokostas, D.J. Frantzeskakis, D. Ratliff, and P.G. Kevrekidis. Comm. Nonlinear Sci. Numer. Simulat. 109 (2022) 106123.


M. Dogan, M. L. Cohen, “Magnetism and Interlayer Bonding in Pores of Bernal-Stacked Hexagonal Boron Nitride”, Phys. Chem. Chem. Phys. 24, 20882 (2022).


S. Stonemeyer, M. Dogan, J. D. Cain, A. Azizi, D. C. Popple, A. Culp, C. Song, P. Ercius, M. L. Cohen, A. Zettl, “Targeting One- and Two-Dimensional Ta–Te Structures via Nanotube Encapsulation”, Nano Lett. 22 (6) 2285–2292 (2022).


M. Dogan, S. Oh, M. L. Cohen, “High Temperature Superconductivity in the Candidate Phases of Solid Hydrogen”, J. Phys.: Condens. Matter 34, 15LT01 (2022).


M. Dogan, S. Oh, M. L. Cohen, “Prediction of High Temperature Superconductivity in C2/c-24 Solid Hydrogen”, Phy. Rev. B 105, L020509 (2022).


Schwartz AV, Lee AN, Theilmann RJ, George UZ. (2022) Spatial Heterogeneity of Excess Lung Fluid in Cystic Fibrosis: Generalized, Localized Diffuse, and Localized Presentations. Applied Sciences, 12(20):10647.


Suarez Trujillo A, Hoang N, Robinson L, McCabe CJ, Conklin D, Minor RC, Townsend J, Plaut K, George UZ, Boerman J, Casey TM. (2022) Effect of circadian system disruption on the concentration and daily oscillations of cortisol, progesterone, melatonin, serotonin, growth hormone, and core body temperature in periparturient dairy cattle. Journal of Dairy Science, 105(3): 2651-2668.


J.Gilles, “Empirical Voronoi wavelets”, Constructive Mathematical Analysis, Vol.5, No.4, 183–189, 2022.


S.Malley, C.Reina, S.Nacy, J.Gilles, B.Koohbord, G.Youssef, “Predictability of mechanical behavior of additively manufactured particulate composites using machine learning and data-driven approaches”, Computers in Industry, Vol.142, 103739, 2022.


T.Jain, M.Lubien, J.Gilles, “Evaluation of neural network algorithms for atmospheric turbulence mitigation”, SPIE – Signal Processing, Sensor/Information Fusion, and Target Recognition XXXI, Vol.12122, 223–236, 2022.


Candib A, Lee N, Sam N, Cho E, Rojas J, Hastings R, DeAlva K, Khon D, Gonzalez A, Molina B, Torabzadeh G, Vu J, Hasenstab K, Sant K, Phillips J, Finley, K. The Influence of Cannabinoids on Drosophila Behaviors, Longevity, and Traumatic Injury Responses of the Adult Nervous System. Cannabis and Cannabinoid Research. Online ahead of print. doi: 10.1089/can.2022.0285. Link.


Cunha GM, Delgado T, Middleton MS, Liew S, Batakis D, Wang K, Loomba R, Huss RS, Myers RP, Sirlin CB, Fowler KJ, Hasenstab KA. Automated CNN-Based Analysis Versus Manual Analysis for MR Elastography in Nonalcoholic Fatty Liver Disease: Inter-method Agreement and Fibrosis Stage Discriminative Performance. AJR American Journal of Roentgenology. 2022 Aug;219(2):224-232. doi: 10.2214/AJR.21.27135. Link.


Yuan NF, Hasenstab K, Retson T, Conrad DJ, Lynch DA, Hsiao A. Unsupervised Learning Identifies CT Measurements as Primary Drivers of Progression, Exacerbation, and Mortality in COPD. Annals of the American Thoracic Society. 2022 Jul 13;19(12):1993-2002. doi: 10.1513/AnnalsATS.202110-1127OC. Link.


Huynh, J, Masoudi S, Noorbakhsh A, Mahmoodi A, Kligerman S, Yen A, Jacobs K, Hahn L, Hasenstab K, Pazzani M, Hsiao A. Deep Learning Radiographic Assessment of Pulmonary Edema: Optimizing Clinical Performance, Training With Serum Biomarkers. IEEE Access. 2022;10:48577-48588. doi: 10.1109/ACCESS.2022.3172706. Link.


C. Laffey, Jia-Chi Chieh, S. K. Sharma, and Raif Farkouh, “1λ Spaced Dual Radiating Modes Based Phased Array Antenna Using Silicon RFICs With Grating Lobe Cancellation”, IEEE Trans Antennas and Propagation, Volume: 70, Issue: 12, December 2022), Page(s): 12328 – 12333


K. Debbarma, N. Truong, S. K. Sharma and Jia-Chi Chieh, “2-D Beam Steering Performance of a Triple Mode Horn Antenna Integrated with Risley Prism and Phase Correcting Surface”, IEEE Open Journal of Antennas and Propagation, Volume: 3, Page(s): 752 – 761, 29 June 2022.


R. Banerjee, S. K. Sharma, Jia-Chi Chieh, R. Farkouh, “Investigations of Heat Sink Property of a Novel Dual Linear Polarized Low Cross-Polarization X-Band Phased Array Antenna Employing Silicon RFICs Based Beamforming Network”, IEEE Open Journal of Antennas and Propagation, Volume 3, pp. 523-537, April 2022.


J. A. Ganie, K. R. Jha, and S. K. Sharma, “Sub-1GHz and Sub-6GHz Reconfigurable MIMO Antenna with 28GHz Array on Shared Chassis for User Equipment’s (UEs)”, Journal of Electromagnetic Waves and Applications, Volume 36, 2022 – Issue 17, Pages 2473-2482


Kumud Jha, Z. Jibran, and S. K. Sharma, “Absorption Peak Controlled Low-Frequency Wideband Flexible FSS Absorber”, IEEE Transactions on Electromagnetic Compatibility AUGUST 2022, Volume: 64, Issue: 4, On Page(s): 975-986.


R. Banerjee, S. K. Sharma and F. Capolino, “A Shared Aperture Ku-/Ka-Band Feed Source for a High Gain Fixed Beam Offset Reflector Antenna,” 2022 IEEE Conference on Antenna Measurements and Applications (CAMA), Guangzhou, China, 2022, pp. 1-3, doi: 10.1109/CAMA56352.2022.10002441.


M. Waheed, K. Jha and S. K. Sharma, “3-D Triple Band and Wideband Antenna for V2X Communications”, IEEE MAPCON 2022, Dec 2022, Bangalore, India.


R. Banerjee, S. K. Sharma, and J-C. Chieh, “An Innovative 3D Metal Printed Dual Linear Polarized Dual Beam Tx/Rx Phased Array Heat Sink Antenna with Silicon RFIC Beamformers”, 2022 IEEE International Symposium on Phased Array Systems & Technology, Oct 11-14, 2022, Boston, USA.


J. Tallo, S. K. Sharma and G. Duran, “Design of a Multiple Beam Wideband Antenna Using 8×8 Butler Matrix Beamformer for 5G NR Bands”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022


K. Debbarma, S. K. Sharma and Jia-Chi Chieh, “Beam Steering Response of X-band Triple-mode Horn with Three Element Risley Prism”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022


K. Debbarma, S. K. Sharma, and Jia-Chi Chieh, “Beam Steering Performance of Horn Antenna with Risley Prism and Integrated Parabolic Phase Correcting Surface”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022


S. Noghanian, R. Shadid, S. Roy, and S. K. Sharma, “Power Efficiency Improvement Using Metasurfaces in a Hybrid Wireless Power Transfer System”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022


H. Clavin, S. Das and S. K. Sharma, “Design of a High Gain Broadband Balanced Antipodal Vivaldi Antenna with 3D Dielectric Lens”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022


S. Das, S. K. Sharma, R. Banerjee, et. al, “A Flat-Panel 8×8 Sequentially Rotated Wideband Microstrip Patch Phased Array Antenna for K/Ka–Band 6U CubeSat Communication Applications”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022 (Abstract).


R. Banerjee, S. K. Sharma, S. Das, et. al, “A Dual Linear/Circular Polarized Wideband Flat Panel Phased Array Antenna for K/Ka-band 6U CubeSat Communication Applications”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022 (Abstract).


S. Biswal, and S. K. Sharma, “A 4 – Port Circularly Polarized MIMO Antenna for Access Point Applications”, IEEE AP-S/URSI 2022, Denver, July 10-15, 2022 (Abstract).


Shiv Narayan, Surya Vv, Raveendranath U Nair and Satish K. Sharma, “Frequency-Selective Rasorber with Hybrid FSS for Low Observable Radome Application”, WAMS 2022 (WIRELESS ANTENNA AND MICROWAVE SYMPOSIUM), Rourkela, India, 5-8 June, 2022.


N. Truong, S. Das, and S. K. Sharma, “Design of an Electrically Small Printed Square Loop Antenna”, 2022 National Radio Science Meeting, Boulder, CO, January 4-8, 2022.

Pairwise interactions of ring dark solitons with vortices and other rings: stationary states, stability features and nonlinear dynamics. Wenlong Wang, T. Kolokolnikov, D.J. Frantzeskakis, R. Carretero-González, and P.G. Kevrekidis. Phys. Rev. A 104 (2021) 023314.


Breather stripes and radial breathers of the two-dimensional sine-Gordon equation. P.G. Kevrekidis, R. Carretero-González, J. Cuevas-Maraver, D.J. Frantzeskakis, J.-G. Caputo, and B.A. Malomed. Comm. Nonlinear Sci. Numer. Simulat. 94 (2021) 105596. Abstract, PDF. Movie for Fig. 6b.


Stability of finite and infinite von-Kármán vortex-cluster streets. Z. Maches, E. Bartley, J. Borjon, and R. Carretero-González. Phys. Rev. E 103 (2021) 032205. 


A. Azizi, M. Dogan, J. D. Cain, K. Lee, X. Yu, W. Shi, E. C. Glazer, M. L. Cohen, A. Zettl, “Experimental and Theoretical Study of Possible Collective Electronic States in Exfoliable Re-Doped NbS2”, ACS Nano 15, (11) 18297–18304 (2021).


J. D. Cain, S. Oh, A. Azizi, S. Stonemeyer, M. Dogan, M. Thiel, P. Ercius, M. L. Cohen, A. Zettl, “Ultranarrow TaS2 Nanoribbons”, Nano Lett. 21 (7), 3211–3217 (2021).


M. Dogan, M. L. Cohen, “Anomalous behavior in high-pressure carbonaceous sulfur hydride”, Physica C 583, 1353851 (2021).


Chandrasekaran S, Danos S, George UZ, Han JP, Quon G, Müller R, Tsang Y, Wolgemuth C. (2021) The Axes of Life: A Roadmap for Understanding Dynamic Multiscale Systems, Integrative and Comparative Biology, icab114.  


Kalyesubula M, Casey TM, Reicher N, Sabastian C, Wein Y, Shira EB, Hoang N, George UZ, Shamay A, Plaut K, Mabjeesh SJ. (2021) Physiological state and photoperiod exposures differentially influence circadian rhythms of body temperature and prolactin and relate to changes in mammary PER1 expression in late pregnant and early lactation dairy goats. Small Ruminant Research, 200, 106394.


Sedaghat MH, George, UZ & Abouali O. (2021) A nonlinear viscoelastic model of mucociliary clearance. Rheol Acta 60, 371–384, https://doi.org/10.1007/s00397-021-01274-44.


Schwartz AV, Sant KE, Navarrete J and George UZ. (2021) Mathematical modeling of the interaction between yolk utilization and fish growth in zebrafish, Danio rerio. Development, 148(9), p.dev193508.


Navarrete J, Wilson P, Allsing N, Gordon C, Margolis R, Schwartz AV, Cho C, Rogowski B, Topps J, George UZ and Sant KE. (2021) The ecotoxicological contaminant tris (4-chlorophenyl) methanol (TCPMOH) impacts embryonic development in zebrafish (Danio rerio). Aquatic Toxicology, 235, p.105815.


George UZ, Moon KS and Lee SQ. (2021) Extraction and Analysis of Respiratory Motion Using a Comprehensive Wearable Health Monitoring System. Sensors, 21(4), p.1393.


K.K.Barr, N.Chiang, A.L.Bertozzi, J.Gilles, S.Osher, P.S.Weiss, “Extraction of hidden science from nanoscale images”, The Journal of Physical Chemistry C, Vol.126, No.1, 3–13, 2021.


Retson T, Hasenstab K, Kligerman S, Jacobs K, Yen A, Brouha S, Hahn L, Hsiao A. Reader Perceptions and Impact of AI on CT Assessment of Air Trapping. Radiology: Artificial Intelligence. 2021;4(2):e210160. doi: 1148/ryai.2021210160. Link.


Hasenstab K, Tabalon J, Yuan N, Retson T, Hsiao A. CNN-based Deformable Registration Facilitates Fast and Accurate Air Trapping Measurements on Inspiratory-Expiratory CT. Radiology: Artificial Intelligence. 2021 Nov 10;4(1): doi: 10.1148/ryai.2021210211. Link.


Cunha GM, Hasenstab KA, Delgado T, Ichikawa S, Lee MH, Dautt Medina PM, Kim SJ, Lee YH, Kwon H, Sirlin CB, Fowler KJ. Multi-arterial phase MRI depicts inconsistent arterial phase hyperenhancement (APHE) subtypes in liver observations of patients at risk for hepatocellular carcinoma. European Radiology. 2021 Apr 19;31(10):7594-7604. doi: 10.1007/s00330-021-07924-8. Link.


Hasenstab KA, Yuan N, Retson T, Conrad DJ, Kligerman S, Lynch DA, Hsiao A; COPDGene Investigators. Automated CT Staging of Chronic Obstructive Pulmonary Disease Severity for Predicting Disease Progression and Mortality with a Deep Learning Convolutional Neural Network. Radiology Cardiothoracic Imaging. 2021 Apr 8;3(2):e200477. doi: 10.1148/ryct.2021200477. Link.


Hasenstab K, Cunha GM, Ichikawa S, Dehkordy SF, Lee MH, Kim SJ, Schlein A, Covarrubias Y, Sirlin CB, Fowler KJ. CNN color-coded difference maps accurately display longitudinal changes in liver MRI-PDFF. European Radiology. 2021 Jul;31(7):5041-5049. doi: 10.1007/s00330-020-07649-0. Link.


Kumud R. Jha, Z. A. P. Jibran, Chitra Singh, and Satish K. Sharma, “4-Port MIMO Antenna using Common Radiator on a Flexible Substrate for Sub-1GHz and Sub-7GHz Band Applications”, IEEE Open Journal on Antennas and Propagation, Volume 2, 2021, PP. 689-701, Digital Object Identifier 10.1109/OJAP.2021.3083932.


G. Mishra and S. K. Sharma, “A Multi-Functional Full-Polarization Reconfigurable 28 GHz Staggered Butterfly 1D-Beam Steering Antenna”, IEEE Trans Antennas and Propagation, Volume: 69, Issue: 10, Oct. 2021, Page(s): 6468 – 6479


D. Singh, Kumud Jha, and S. K. Sharma, “Low Cost Partially Optically Transparent Flexible Substrate based Multiband Compact Printed Dipole Antenna for BAN and IOT Applications”, International Journal of RF and Microwave Computer-Aided Engineering Vol. 31, Issue: 8, Aug 2021, DOI: 10.1002/mmce.22732.


S. Das, S. K. Sharma and R. Banerjee, “A 4×4 K/Ka-Band Sequentially Rotated Wideband Circularly Polarized Microstrip Phased Array Antenna with Stable Gain Performance”, 2021 IEEE AP-S International Symposium on Antennas and Propagation, Singapore, Dec 4-10, 2021.


Jia-Chi S. Chieh, S. Das and S. K. Sharma, “A Wideband Phased Array Antenna with Grating Lobe Cancellation”, 2021 IEEE AP-S International Symposium on Antennas and Propagation, Singapore, Dec 4-10, 2021.


C. Laffey, S. K. Sharma, T. Gilmore, and D. Kronewitter, “Ku-Band Dual Linear Polarized Flat Panel Phased Array Antenna with Very Low Cross Polarization”, 2021 IEEE AP-S International Symposium on Antennas and Propagation, Singapore, Dec 4-10, 2021.


N. Rana, K. Jha, and S. K. Sharma, “A Gap Coupled Monopole MIMO Antenna for 5G NR and Wi-Fi 6 Applications”, InCAP 2021, Indian Conference on Antennas and Propagation, India, 13-16 December 2021


D. Singh, K. Jha and S. K. Sharma, “Dual Polarized Low Frequency Active Wideband Absorber Design”, InCAP 2021, Indian Conference on Antennas and Propagation, 13-16 December 2021


R. Banerjee, S. K. Sharma and S. Das, “Design of Dual Circular Polarized Wideband Stacked Patch Flat Panel Phased Array Antenna using Ka-band 5G Silicon RFICs in Beamforming Network”, 19th International Symposium on Antenna Technology and Applied Electromagnetics (ANTEM 2021), Winnipeg, Canada, 08-11 August 2021.


S. Das and S. K. Sharma, “Performance Comparison of K-Band Sequentially Rotated Wideband Circularly Polarized Phased Arrays using Different Array Lattices”, 19th International Symposium on Antenna Technology and Applied Electromagnetics (ANTEM 2021), Winnipeg, Canada, 08-11 August 2021.


C. Laffey, S. K. Sharma, R. Farkouh, and J.-C. Chieh, “Dual Mode Phased Array Antenna using Silicon RFICs based Integrated Beamforming Network”, 2021 Radio & Wireless Week (RWW 2021), January 17-20, 2021, San Diego, CA.


G. Mishra and S. K. Sharma, “Ka-Band Switched Multiple-Beams Offset Spherical Reflector Fed by Array of Dual-CP Horn Antennas”, 2021 Radio & Wireless Week (RWW 2021), January 17-20, 2021, San Diego, CA.


C. Laffey, S. K. Sharma, R. Farkouh, and J.-C. Chieh, “’Dual Mode Phased Array Antenna using Silicon RFICs based Integrated Beamforming Network”, 2021 National Radio Science Meeting (NRSM 2021), January 4-9, 2021, Boulder, CO. (Abstract).


R. Banerjee, S. K. Sharma, R. Farkouh, and J.-C. Chieh, “All Metal Heat Sink Dual Linear Polarized Phased Array Antenna for X-Band Communication Applications”, 2021 National Radio Science Meeting (NRSM 2021), January 4-9, 2021, Boulder, CO. (Abstract).


Bendik, J., Kalia, R., Sukumaran, J., Richardot, W. H., Hoh, E., & Kelley, S. T. (2021). Automated high confidence compound identification of electron ionization mass spectra for nontargeted analysis. Journal of Chromatography A, 1660, 462656. https://doi.org/10.1016/j.chroma.2021.462656


Wong, T. K. F., Li, T., Ranjard, L., Wu, S., Sukumaran, J., & Rodrigo, A. G. (2021). An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes. PLOS Computational Biology, 17(9), e1008924.


Miralles, A., Ducasse, J., Brouillet, S., Flouri, T., Fujisawa, T., Kapli, P., Knowles, L. L., Kumari, S., Stamatakis, A., Sukumaran, J., Lutteropp, S., Vences, M., & Puillandre, N. (2021). SPART: A versatile and standardized data exchange format for species partition information. Molecular Ecology Resourceshttps://doi.org/10.1111/1755-0998.13470


Sukumaran, J., Holder, M., & Knowles, L. L. (2021). Incorporating the speciation process into species delimitation. PLOS Computational Biology, 17(5), e1008924. https://doi.org/10.1371/journal.pcbi.1008924

M. Dogan, M. L. Cohen, “Magnetic Multilayer Edges in Bernal-Stacked Hexagonal Boron Nitride”, Phys. Rev. B 102, 155419 (2020).


M. Dogan, S. Oh, M. L. Cohen, “Observed Metallization of Hydrogen Interpreted as a Band Structure Effect”, J. Phys.: Condens. Matter 33 03LT01 (2020).


A. Azizi, M. Dogan, H. Long, J. D. Cain, K. Lee, R. Eskandari, A. Varieschi, E. C. Glazer, M. L. Cohen, A. Zettl, “High-Performance Atomically-Thin Room-Temperature NO2 Sensor”, Nano Lett. 20, (8), 6120–6127 (2020).


M. Dogan, S. M. Gilbert, T. Pham, B. Shevitski, P. Ercius, S. Aloni, A. Zettl, M. L. Cohen, “Electron Beam-Induced Nanopores in Bernal-Stacked Hexagonal Boron Nitride”, Appl. Phys. Lett. 117, 023102 (2020).


A. Azizi, M. Dogan, J. D. Cain, R. Eskandari, X. Yu, E. C. Glazer, M. L. Cohen, A. Zettl, “Frustration and Atomic Ordering in a Monolayer Semiconductor Alloy”, Phys. Rev. Lett. 124, 096101 (2020).


Horkowitz AP, Schwartz AV, Alvarez CA, Herrera EB, Thoman ML, Chatfield DA, Osborn KG, Feuer R, George UZ and Phillips JA. (2020) Acetylcholine Regulates Pulmonary Pathology During Viral Infection and Recovery. Immunotargets Therapy 9:333-350.


Mativo J, Hallinan K, George UZ, Reich G and Steininger R. (2020) Topology optimized thermoelectric generator: a parametric study. Energy Harvesting and Systems, vol. 7, no. 2, pp. 33-53. 


C-A.Deledalle, J.Gilles, “Blind Atmospheric TUrbulence Deconvolution”, IET Image Processing, Vol.14, No.14, 3422–3432, 2020.


B.Hurat, Z.Alvarado, J.Gilles. “The Empirical Watershed Wavelet”, Journal of Imaging, Special Issue “2020 Selected Papers from Journal of Imaging Editorial Board Members”, Vol.6, No.12, 140, 2020.


J.Gilles, “Continuous empirical wavelets systems”, Advances in Data Science and Adaptive Analysis, Vol. 12, No 03n04, 2050006, 2020.


K.Bui, J.Fauman, D.Kes, L.Torres Mandiola, A.Ciomaga, R.Salazar, A.L.Bertozzi, J.Gilles, D.P.Goronzy, A.I.Guttentag, P.S.Weiss, “Segmentation of Scanning Tunneling Microscopy Images Using Variational Methods and Empirical Wavelets”, Pattern Analysis and Applications, Vol. 23, 625–651, 2020.


Hansen K, Hasenstab K, Schwartzman A. Estimating Mountain Glacier Flowlines by Local Linear Regression Gradient Descent. IEEE Transactions on Geoscience and Remote Sensing. 2020;59(12):10022-10034. doi: 10.1109/TGRS.2020.3035513. Link.


Lin W, Hasenstab K, Cunha GM, Schwartzman A. Comparison of handcrafted features and convolutional neural networks for liver MR image adequacy assessment. Scientific Reports. 2020;10(1):20336. doi: s41598-020-77264-y. Link.


G. Mishra, S. K. Sharma, and Jia-Chi S. Chieh, “A High Gain Series-fed Circularly Polarized Traveling-Wave Antenna at W-band using a New Butterfly Radiating Element”, IEEE Trans Antennas and Propagation, Vol. 68, No. 12, December 2020, pp. 7947-7957.


N. Lou, X. Yu, G. Mishra and S. K. Sharma, “A Millimeter Wave (V-Band) Dual Circular-Polarized Horn Antenna based on an Inbuilt Mono-Groove Polarizer”, IEEE Antennas and Wireless Propagation Letters (AWPL), Vol. 19, No. 11, pp. 1933-1937, Nov 2020.


S. Biswal, S. K. Sharma, and S. Das, “Design of Microstrip Slot MIMO Antennas for Cellular Bands Along With 5G Phased Array Antenna for User Equipments (UEs)”, IEEE ACCESS, Nov 16, 2020, Vol. 8, 2020, pp. 209138-209152.


Jia-Chi Chieh, E. Yeo, R. Farkouh, A. Castro, M. Kerber, R. Olsen, E. Merulla, and S. K. Sharma, “Development of Flat Panel Active Phased Array Antennas using 5G Silicon RFICs and Ku- and Ka-bands”, IEEE ACCESS, Oct 21, 2020, Vol. 8, 2020, pp. 192669-192681.


Chitra Singh, Kumud Ranjan Jha, and S. K. Sharma, “A Tripole Type Wideband Bandpass Frequency Selective Surface for X-Band Applications”, IET Microwaves, Antennas & Propagation, Volume 14, Issue 13, 28 Oct 2020, p. 1619 –1625.


Ghanshyam Mishra, Satish K. Sharma, and Jia-Chi S. Chieh, “Analysis and Design of a W-Band Circular Polarized Feed Horn with Built-In Polarizer for Low f/D Offset Reflector Antenna”, The Radio Science Bulletin No 374 (September 2020), pp. 17-27.


F. Meng, T. Tang, Y. Liu and S. K. Sharma, “A Minituarized Patch Antenna with Enhanced Bandwidth using RIS and Coplanar Patches”, International Journal of RF and Microwave Computer-Aided Engineering, Vol. 30, No. 7, July 2020.


I. Agnihotri and S. K. Sharma, “Design of a 3D Metal Printed Axial Corrugated Horn Antenna Covering Full Ka-Band”, IEEE Antennas and Wireless Propagation Letters (AWPL), Vol. 19, No. 4, April 2020, pp. 522-526.


G. Mishra, S. K. Sharma, J-C. Chieh, and R. Olsen, “Ku-Band Dual Linear-Polarized 1D Beam Steering Antenna using Parabolic-Cylindrical Reflector Fed by a Phased Array Antenna”, IEEE Open Journal on Antennas and Propagation, Vol. 1, March 3, 2020, pp. 57-70,


Chitra Singh, Kumud R. Jha, S. K. Sharma, J. A. Pandit and G. Singh, “Design of a Wideband Square Slot Bandpass FSS using Phase Range Analysis”, Engineering Reports, Online ISSN:2577-8196, John Wiley & Sons Ltd, 05 January 2020, pp. 1-12


F. Meng and S. K. Sharma, “A Wideband Resonant Cavity Antenna with Compact Partially Reflective Surface”, IEEE Trans Antennas and Propagation, Volume: 68, Issue: 2, Feb. 2020, pp. 1155-1160.


L. Shafai, S. K. Sharma, and C. Shafai, “Antenna Miniaturization and Adaptive Aperture Antennas”, 2020 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, July 2020.


Z. A. Pandit Jibran, Kumud R. Jha, and S. K. Sharma, “Design of Dual Band Dual Polarized Active FSS”, 2020 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, July 2020.


D. Singh, K. R. Jha, and S. K. Sharma, “Low Cost Flexible Antenna for IoT Applications”, 2020 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, July 2020.


Sima Noghanian, Satish Sharma, Michael Griesi, “Ka Band Circular Polarizer using a Coaxial Waveguide with a Helical Ridge”, 2020 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting (abstract).


Sonika Biswal, Satish Sharma, Sushrut Das, “Microstrip Slot MIMO Antennas on a Smart Phone Size Ground Plane Covering Cellular, Sub-6 GHz Bands, and 5G Band Phased Array Antennas”, 2020 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting (abstract).


S. Biswal, S. K. Sharma, and S. Das, “Circularly Polarized 5G Band MIMO Antenna Array for Future User Terminals”, The Applied Computational Electromagnetics Society Conference (ACES 2020).


G. Mishra, S. K. Sharma, Jia-Chi Chieh, R. Olsen, and P. Nguyen, “Ku-Band Dual Linear Polarized Parabolic-Cylindrical Reflector Antenna with Beam Steering Performance”, The Applied Computational Electromagnetics Society Conference (ACES 2020).


R. Banerjee, S. K. Sharma, P. Nguyen, Jia-Chi Chieh and R. Olsen, “Investigations of All Metal Heat Sink Dual Linear Polarized Phased Array Antenna for Ku-Band Applications”, The Applied Computational Electromagnetics Society Conference (ACES 2020).


C. Laffey, G. Mishra, P. Nguyen, and S. K. Sharma, “3D Printed Magneto-Electric Massive MIMO Array Panel Antenna covering 5G New Radio Bands”, GOMACTech-20.


G. Mishra, S. K. Sharma, Jia-Chi Chieh, and R. Olsen, “Ku-Band Dual-Linear Polarized Parabolic-Cylindrical Reflector Antenna with Beam Steering Performance”, GOMACTech-20.


O. Flores, S. K. Sharma, and K. Shah, “Limitations to a Broadband Noise Canceling LNA”, GOMACTech-20.

 

2023

CSRCR2023-11 Energy Preservation of High-Order Mimetic Differences for Systems of Conservation Laws
Miguel A. Dumett, Johnny Corbino, and Jose E. Castillo
CSRCR2023-10 High Order Mimetic Differences and Applications
Miguel A. Dumett and Jose E. Castillo
CSRCR2023-09 PDE Base Image Compression
Devin Stanley and Miguel A. Dumett
CSRCR2023-08 High Order Mimetic Symplectic Methods For Hamiltonian Systems
Anand Srinivasan and Jose E. Castillo
CSRCR2023-07 MOLE: Mimetic Operators Library Enhanced. The Open-Source Library for Solving Partial Differential Equations using Mimetic Methods
Johnny Corbino and Jose E. Castillo
CSRCR2023-06 Mimetic Differences for the Perona-Malik Equation
Thomas H. Keller and Miguel A. Dumett
CSRCR2023-05 Energy Conservation and Convergence of High-Order Mimetic Schemes for the 3D Advection Equation
Miguel A. Dumett and Jose E. Castillo
CSRCR2023-04 Simulating the Nonlinear Klein-Gordon-Maxwell System in the Relativistic Limit with Mimetic Differences
Hayden Frye and Miguel A. Dumett
CSRCR2023-03 SIR Model For Rabies Among Foxes Using Mimetic Differences
Thomas Stone and Miguel A. Dumett
CSRCR2023-02 Solving the Viscous Burgers’ Equation with Mimetic Differences
Michael Sanders and Miguel A. Dumett
CSRCR2023-01 Mimetic Analogs of Vector Calculus Identities
Miguel A. Dumett and Jose E. Castillo

2022

CSRCR2022-03 Energy Conservation of Second-Order Mimetic Difference Schemes for the 1D Advection Equation
Miguel A. Dumett and Jose E. Castillo
CSRCR2022-02 Interpolation Operators for Staggered Grids
Miguel A. Dumett and Jose E. Castillo
CSRCR2022-01 Implementation Of Mimetic Relaxation Runge Kutta Methods
Anand Srinivasan, Johnny Corbino, and Jose E. Castillo

2021

CSRCR2021-01 Modeling Nonlinear Dendritic Processing of Facilitation in a Dragonfly Target Tracking Neuron
Patrick A. Shoemaker

2020

CSRCR2020-07 Exploring Economic Pricing in Wireless Networking Design for QoE-Driven Multimedia Services
Krishna Ramamoorthy
CSRCR2020-06 Clustering of the Microorganisms into the Empires and Kingdoms
Kunal Lalwani
CSRCR2020-05 Impact of Automated Vehicles’ Right of Way on Drivers’ Behavior; A Narrow AVExclusive Lane on an Existing Smart Freeway
Aryan Sohrabi
CSRCR2020-04 Design and Analysis of Innovative Circular Polarized High Gain Feed-Reflector and Phased Array Antenna System Solutions
Ghanshyam Mishra and Satish K. Sharma
CSRCR2020-03 Models for Propagating Sentiment analysis on news articles to forecast EUR-USD exchange rates
Gopinath Dayalan and Xiaobai Liu
CSRCR2020-02 Models for Propagating Facilitation in the Insect Visual System
Pradeep Singh
CSRCR2020-01 Development of Machine Learning Algorithms for Low-Resolution MIMO Signal Processing
Van Ly Nguyen

2018

CSRCR2018-01 A Crash Course in Linear Elasticity
Guillermo Miranda

2017

CSRCR2017-02 PETSc-based Parallelization of the fully 3D-curvilinear Non-hydrostatic Coastal Ocean Dynamics Model, GCCOM
Manuel Valera, Neelam Patel, and Jose Castillo
CSRCR2017-01 MOLE: Mimetic Operators Library Enhanced. The Open-Source Library for Solving Partial Differential Equations using Mimetic Methods
Johnny Corbino and Jose Castillo

2016

CSRCR2016-01 Implementation of the Newton-Cotes and Mimetic Quadrature Coefficients for Numerical Integration
Anand Srinivasan and Jose E. Castillo

2014

CSRCR2014-04 Constructing a Mimetic Curl Using Gauss’ Theorem
Eduardo Sanchez, Guillermo Miranda, and Jose Castillo
CSRCR2014-03 Shallow Water Equations Implemented on GPUs
M. Abouali and Jose E. Castillo
CSRCR2014-02 Regridding Data: A Package to Interpolate, Extrapolate, and Fitt a Curve
M. Abouali and Jose E. Castillo
CSRCR2014-01 Improving the Performance of Thermochemical Computations Using Many- Task Computing Methods
Mary P. Thomas, S. Bhattacharjee, Carny Cheng, Robert A. Edwards, Christopher P. Paolini

2013

CSRCR2013-02 An Algorithmic Study of the Construction of Higher-order One-dimensional Castillo-Grone Mimetic Gradient and Divergence Operators
E.J. Sanchez and J.E. Castillo
CSRCR2013-01 High-Performance Computing in Simulating Carbon Dioxide Geologic Sequestration
E.J. Sanchez, C.P. Paolini, and J.E. Castillo

2012

CSRCR2012-05 Mimetic Methods Toolkit: An Object-Oriented API Implementing Mimetic Discretization Methods
E.J. Sanchez, C.P. Paolini, and J.E. Castillo
CSRCR2012-04 Solving Advective Equations Using Castillo-Grone’s Mimetic Operators
M. Abouali and J. E. Castillo
CSRCR2012-03 FEMVib an Automated Publicly Available Web-Service for Solving the Vibrational Schrödinger Equation
P. Zajac, D. Xu and A. Cooksy
CSRCR2012-02 High-Order Compact Castillo-Grone’s Mimetic Operators
M. Abouali and J. E. Castillo
CSRCR2012-01 Hybrid High-Order Eulerian-Lagrangian Methods for Simulations of Particle-Laden Flow with Shocks
J.P. Suarez

2011

CSRCR2011-02 Finite Volume Discretization of Flux-Divergence in Mapped Grids with Embedded Boundaries
D. Batista
CSRCR2011-01 Genomic Studies Using the Invertebrate Chordate Ciona Intestinalis
J. Chen and R.W. Zeller

2010

CSRCR2010-07 Shear Viscosity in the Postquasistatic Approximation
C. Peralta, L. Rosales, B. Rodríguez-Mueller, and W. Barreto
CSRCR2010-06 Heat Flow in the Postquasistatic Approximation
B. Rodríguez-Mueller, C. Peralta, W. Barreto, and L. Rosales
CSRCR2010-05 Volume Segmentation with Gray-Level and Spatial Correlation-Based Entropic Tresholding, Contour Detection, and Contour Extraction from Tomographic Image Data
M. Ghochani, A.R.C. Baljon, T. G. Frey, and C. Bazan
CSRCR2010-04 Equispaced Pareto Front Construction for Constrained Biobjective Optimization
V. Pereyra, M. Saundersy and J.E. Castillo
CSRCR2010-03 Visualization of the Invertebrate Chordate Ciona Intestinalis Genome Using a Custom Genome Browse
J.S. Chen and R.W. Zeller
CSRCR2010-02 General Curvilinear Ocean Model (GCOM) Next Generation
M. Abouali and J.E. Castillo
CSRCR2010-01 Scale-up of Flotation Processes
M. Burstein

2009

CSRCR2009-09 Image Processing Techniques for Assessing Contractility in Isolated Neonatal Cardiac Myocytes
C. Bazan, D. Torres-Barba, P. Blomgren, and P. Paolini
CSRCR2009-08 A Computational Workflow for the Estimation of Environmental Viral Diversity in Metagenomes
F. E. Angly
CSRCR2009-07 Fast Wave Propagation by Model Order Reduction
V. Pereyra and B. Kaelin
CSRCR2009-06 Excited-State Effective Masses in Lattice QCD
G.T. Fleming, S.D. Cohen, H.W. Lin, and V. Pereyra
CSRCR2009-05 Equispaced Pareto Front Construction for Constrained Multiobjective Optimization
V. Pereyra, M. Saunders, and J.E. Castillo
CSRCR2009-04 Exponential Data Fitting
V. Pereyra and G. Scherer
CSRCR2009-03 Mimetic Finite Difference PDE-based Models in Image Processing
C. Bazan, M. Abouali, J.E. Castillo, and P. Blomgren
CSRCR2009-02 Image Processing Techniques for Assessing Contractility in Isolated Adult Cardiac Myocytes
C. Bazan, D. Torres Barba, P. Blomgren, and P. Paolini
CSRCR2009-01 NFL Player Rating Systems: An Investigations Of The Passer Rating And Proposal For A Rusher Rating
J.L. Wilson and R. Levine

2008

CSRCR2008-27 PDE-Based Image and Structure Enhancement for Electron Tomography of Mitochondria
C. Bazan
CSRCR2008-26 Solving the Vibrational Schrödinger Equation on an Arbitrary Multidimensional Potential Energy Surface by the Finite Element Method
D. Xu, J. Stare, and A. L. Cooksy
CSRCR2008-25 Azimuthal Modulational Instability of Vortices in the Nonlinear Schrödinger Equation
R.M. Caplan, Q.E. Hoq, R. Carretero-González, and P.G. Kevrekidis
CSRCR2008-24 Spinor Bose-Einstein Condensate Past an Obstacle
A.S. Rodrigues, P.G. Kevrekidis, R. Carretero-González, D.J. Frantzeskakis, P. Schmelcher, T.J. Alexander, and. Yu.S. Kivshar
CSRCR2008-23 Dissipative Solitary Waves in Periodic Granular Crystals
R. Carretero-González, D. Khatri, M.A. Porter, P.G. Kevrekidis, and C. Daraio
CSRCR2008-22 Controlling Chaos of a Bose-Einstein Condensate Loaded Into a Moving Optical Fourier-Synthesized Lattice
R. Chacon, D. Bote, and R. Carretero-González
CSRCR2008-21 A Map Approach to Stationary Solutions of the Discrete Nonlinear Schrödinger Equation
R. Carretero-González
CSRCR2008-20 Steady State Diffusion Problems on Non-Trivial Domains: Support Operator Method Integrated with Direct Optimized Grid Generation
J.E. Castillo and T. McGuinness
CSRCR2008-19 Structure Enhancement Diffusion and Contour Extraction for Electron Tomography of Mitochondria
C. Bazan, M. Miller, and P. Blomgren
CSRCR2008-18 Direct Measurements of Heat Output by Marine Microbial and Phage Communities
E. Djamali, P. Turner, J. Nulton, F. Rohwer, and P. Salamon
CSRCR2008-17 Fast Wave Propagation by Model Order Reduction
V. Pereyra, L. Carcione, J. Mould, and R. Freund
CSRCR2008-16 Structure and stability of two-dimensional Bose-Einstein condensates under both harmonic and lattice confinement.
K.J.H. Law, P.G. Kevrekidis, B.P. Anderson, R. Carretero-González, and D.J. Frantzeskakis
CSRCR2008-15 Surface Solitons in Three Dimensions.
Q.E. Hoq, R. Carretero-González, P.G. Kevrekidis, B.A. Malomed, D.J. Frantzeskakis, Yu.V. Bludov, and V.V. Konotop
CSRCR2008-14 Multistable Solitons in Higher-Dimensional Cubic-Quintic Nonlinear Schrödinger Lattices.
C. Chong, and R. Carretero-González, B.A. Malomed, and P.G. Kevrekidis
CSRCR2008-13 Nonlinear dynamics of Bose-condensed gases by means of a low- to high-density variational approach.
A.I. Nicolin and R. Carretero-González
CSRCR2008-12 Solitons in one-dimensional nonlinear Schrödinger lattices with a local inhomogeneity.
F. Palmero, R. Carretero-González, J. Cuevas, P.G. Kevrekidis, and W. Królikowski
CSRCR2008-11 Dynamics of Vortex Formation in Merging Bose-Einstein Condensate Fragments.
R. Carretero-González, B.P. Anderson, P.G. Kevrekidis, D.J. Frantzeskakis, and C.N. Weiler
CSRCR2008-10 Resonant energy transfer in Bose-Einstein condensates.
A.I. Nicolin, M.H. Mogens, J.W. Thomsen, and R. Carretero-González
CSRCR2008-09 Nonlinear Waves in Bose-Einstein Condensates: Physical Relevance and Mathematical Techniques.
R. Carretero-González, D.J. Frantzeskakis, and P.G. Kevrekidis
CSRCR2008-08 Radially Symmetric Nonlinear States of Harmonically Trapped Bose-Einstein Condensates.
G. Herring, L.D. Carr, R. Carretero-González, and P.G. Kevrekidis, D.J. Frantzeskakis
CSRCR2008-07 Faraday waves in Bose-Einstein condensates.
A.I. Nicolin, R. Carretero-González, and P.G. Kevrekidis
CSRCR2008-06 Extended Nonlinear Waves in Multidimensional Dynamical Lattices.
Q.E. Hoq, J. Gagnon, P.G. Kevrekidis, B.A. Malomed, D.J. Frantzeskakis, and R. Carretero-González
CSRCR2008-05 Polarized States and Domain Walls in Spinor Bose-Einstein Condensates.
H.E. Nistazakis, D.J. Frantzeskakis. P.G. Kevrekidis, B.A. Malomed, R. Carretero-González, and A.R. Bishop
CSRCR2008-04 Bright-Dark Soliton Complexes in Spinor Bose-Einstein Condensates
H.E. Nistazakis, D.J. Frantzeskakis. P.G. Kevrekidis, B.A. Malomed, and R. Carretero-González
CSRCR2008-03 Symmetry breaking in linearly coupled dynamical lattices.
G. Herring, P.G. Kevrekidis. B.A. Malomed, R. Carretero-González, and D.J. Frantzeskakis
CSRCR2008-02 Non-Equilibrium Dynamics and Superfluid Ring Excitations in Binary Bose-Einstein Condensates
K.M. Mertes, J. Merrill, R. Carretero-González, D.J. Frantzeskakis, P.G. Kevrekidis, and D.S. Hall
CSRCR2008-01 Čerenkov-Like Radiation in a Binary Superfluid Flow Past an Obstacle
H. Susanto, P.G. Kevrekidis. R. Carretero-González, B.A. Malomed, D.J. Frantzeskakis, and A.R. Bishop

2007

CSRCR2007-21 Image smoothing and edge detection by nonlinear diffusion and bilateral filter
C. Bazan and P. Blomgren
CSRCR2007-20 Adapting the LMF temporal splining procedure from serial to MPI/Linux clusters
S. Akhter, I. Sarkar, K. Golam Rabbany, N. Akter, S. Ahkter, Y. Chemin and H. Kiyoshi
CSRCR2007-19 A structural diffusion approach to labeling rows and columns in an irregular array
P. Salamon, B. Felts, C. Hand, A. Limon, J. Rose and J. Torre-Bueno
CSRCR2007-18 Ab initio nuclear shell model calculations with a three-nucleon force for 15O, 16O, 17O, and 9Be
Hai Ah Nam
CSRCR2007-17 Total variation-based image and structure enhancement for electron tomography.
C. Bazan and P. Blomgren
CSRCR2007-16 Parameter-free adaptive total-variation based noise removal and edge strengthening for mitochondrial structure extraction.
P. Blomgren and C. Bazan
CSRCR2007-15 Radial function collocation solution of partial differential equations in irregular domains.
V. Pereyra, G. Scherer, and P. Gonzalez Casanova
CSRCR2007-14 Fast computation of equispaced Pareto manifolds and Pareto fronts for multiobjective optimization problems.
V. Pereyra
CSRCR2007-13 Aircraft design optimization.
J.J. Alonso, P. LeGresley, and V. Pereyra
CSRCR2007-12 Variable projections neural network training.
V. Pereyra, G. Scherer, and F. Wong
CSRCR2007-11 Least squares collocation solution of elliptic problems in general regions.
V. Pereyra and G. Scherer
CSRCR2007-10 Modeling of rupture propogation using high-order mimetic finite differences.
O. Rojas, S. Day, J. Castillo, and L.A. Dalguer
CSRCR2007-09 Positronic complexes with unnatural parity.
M.W.J. Bromley, J. Mitroy, and K. Varga
CSRCR2007-08 Bifurcation analysis of bubble dynamics in fluidized beds.
P. Blomgren, A. Palacios, B. Zhu, S. Daw, C. Finney, J. Harlow, and S. Pannala
CSRCR2007-07 Properties of relativistic compact stars.
Alexander W Ho
CSRCR2007-06 Rotating neutron stars.
F. Weber and P. Rosenfield
CSRCR2007-05 Mimetic finite difference modeling of 2D elastic P-SV wave propogation.
O.J. Rojas
CSRCR2007-04 Total variation based image and structure enhancement for electron tomography.
C. Bazan
CSRCR2007-03 Generating phase shifts from pseudo state energy shifts.
J. Mitroy and M.W.J. Bromley
CSRCR2007-02 Excited States of Positronic Atoms
M.W.J. Bromley and J. Mitroy
CSRCR2007-01 Dispersion Coefficients of the Excited States of Lithium Atoms
J.-Y. Zhang, J. Mitroy and M.W.J. Bromley

2006

CSRCR2006-32 Convergence of the partial wave expansion of the He ground state.
M.W.J. Bromley and J. Mitroy
CSRCR2006-31 Convergence of an s-wave calculation of the He ground state.
J. Mitroy, M.W.J. Bromley, and K. Ratnavelu
CSRCR2006-30 Generating Phase Shifts from Pseudo State Energy Shifts.
J. Mitroy and M.W.J. Bromley
CSRCR2006-29 Initio Study of the Torsional Motion in Tolane.
D. Xu and A.L. Cooksy
CSRCR2006-28 Neutron Star Interiors and the Equation of State of Superdense Matter.
F. Weber, R. Negreiros, and P. Rosenfield
CSRCR2006-27 Neutron Star Interiors and the Equation of State of Ultra-Dense Matter.
F. Weber, R. Negreiros, P. Rosenfield, and A. Torres i Cuadrat
CSRCR2006-26 Constraints on the High-Density Nuclear Equation of State from the Phenomenology of Compact Stars and Heavy-Ion Collisions.
T. Klahn, D. Blaschke, E.N.E. van Dalen, A. Faessler, C. Fuchs, T. Gaitnos, H. Grigorian, A. Ho, E.E. Kolomeitsev, M.C. Miller, G. Ropke, J. Trumper, D.N. Voskresensky, and F. Weber
CSRCR2006-25 Strange Quark Matter and Compact Stars.
F. Weber
CSRCR2006-24 The Cooling of Compact Stars.
Dany Page, U. Geppert, and F. Weber
CSRCR2006-23 Evidence for White Dwarfs with Strange-Matter Cores.
G.J. Mathews, I.-S Suh, N.Q. Lan, K. Otsuki, and F. Weber
CSRCR2006-22 Analysis of White Dwarfs with Strange-Matter Cores.
G.J. Mathews, I.-S Suh, B. O’Gorman, N.Q. Lan, W. Zech, K. Otsuki, and F. Weber
CSRCR2006-21 Strangeness in Compact Stars.
F. Weber, A. Torres i Cuadrat, A. Ho, and P. Rosenfield
CSRCR2006-20 Strangeness in Neutron Stars.
F. Weber, A. Ho, R.P. Negreiros, and P. Rosenfield
CSRCR2006-19 Ultra-Dense Neutron Star Matter, Strange Quark Stars, and the Nuclear Equation of State.
F. Weber, M. Meixner, and R.P. Negreiros
CSRCR2006-18 Compact Star Properties Revised with Color Superconducting Phases of Quark Matter: Implications on Rotation and Emission.
A. Torres i Cuadrat, and F. Weber
CSRCR2006-17 Pulsars as Astrophysical Laboratories for Nuclear and Particle Physics.
F. Weber, R. Negreiros, P. Rosenfield, and M. Stejner
CSRCR2006-16 Mimetic Discretization of Elliptic PDE with Full Tensor Coefficients.
H. Vu and J. Castillo
CSRCR2006-15 Adaptive Finite Element Method for Image Processing.
C. Bazan and P. Blomgren
CSRCR2006-14 Random Walk Currency Futures Profits Revisited.
K. Pukthuanthong, L.R. Thomass III, and C. Bazan
CSRCR2006-13 Second Bound State of PsH.
M.W.J. Bromley and J. Mitroy
CSRCR2006-12 Existence of a 2-P-o Excited State for a +Ca System.
M.W.J. Bromley and J. Mitroy
CSRCR2006-11 Multifrequency Pattern Generation Using Group-Symmetric Circuits.
J. Neff, V. In, B. Meadows, C. Obra, A. Palacios, and R. Carretero-Gonzalez
CSRCR2006-10 Skyrmion-Like States in Two and Three-Dimensional Dynamical Lattices.
P.G. Kevrekidis, R. Carretero-Gonzalez, D.J. Frantzeskakis, B.A. Malomed, and F.K. Diakonos
CSRCR2006-09 Mobility of Discrete Solitons in Quadratically Nonlinear Media.
H. Susanto, P.G. Kevrekidis, R. Carretero-Gonzalez, B.A. Malomed, and D.J. Frantzeskakis
CSRCR2006-08 Discrete Surface Solitons in Quadratically Nonlinear Media.
H. Susanto, P.G. Kevrekidis, B.A. Malomed, R. Carretero-Gonzalez, and D.J. Frantzeskakis
CSRCR2006-07 Rotating Matter Waves in Bose-Einstein Condensates.
T. Kapitula, P.G. Kevrekidis, and R. Carretero-Gonzalez
CSRCR2006-06 Mode Locking of a Driven Bose-Einstein Condensate.
A.I. Nicolin, M.H. Mogens, and R. Carretero-Gonzalez
CSRCR2006-05 Generating Vortices and Vortex Rings in Sliced Condensates.
N. Whitaker, P.G. Kevrekidis, R. Carretero-Gonzalez, and D.J. Frantzeskakis
CSRCR2006-04 Vortex Manipulation by Laser Tweezers in Bose-Einstein Condensates.
R. Carretero-Gonzalez, M.C. Davis, and P.G. Kevrekidis
CSRCR2006-03 Parameter-free TV-based Image Processing.
Carlos Bazan
CSRCR2006-02 A A Generalized Multilevel Adaptive Solver for PDEs with Fast Transitions
Alfonso Limon
CSRCR2006-01 A Numerical Investigation of Flame Geometry in Opposed Flow, Thermal Regime Flame Spread over Thin Fuels
Christopher P. Paolini, Ameya Udgaonkar, Subrata Bhattacharjee, Shuhei Takahashi, and Kazunori Wakai